tokei-api - Code Line Counter

Analysis Results: https://github.com/matsojr22/mapseq_processing_Jacobs

2026-04-22 15:27

Lines of Code by Language

Code, Comments, and Blank Lines Ratio

Visualize GitDiagram DeepWiki

Language ↕ Files ↕ Code ↕ Comments ↕ Blanks ↕ Total ↕

▶ HTML

4464

4550

File ↕	Code ↕	Blanks ↕	Total ↕
`./Official Documentation/html/14_Experimental_Features.html`	93	2	95
`./Official Documentation/html/12_Troubleshooting_Best_Practices.html`	350	0	350
`./Official Documentation/html/04_Main_Processing_Pipeline.html`	479	6	485
`./Official Documentation/html/01_Introduction.html`	198	7	205
`./Official Documentation/html/08_Output_Files_Interpretation.html`	157	1	158
`./Official Documentation/html/05_Statistical_Methods.html`	423	8	431
`./Official Documentation/html/09_Code_Review.html`	308	11	319
`./Official Documentation/html/13_References_Appendices.html`	632	0	632
`./Official Documentation/html/07_Helper_Scripts.html`	290	3	293
`./Official Documentation/html/06_Probability_Models.html`	395	7	402
`./Official Documentation/html/03_Data_Preparation.html`	172	7	179
`./Official Documentation/html/10_Mathematical_Functions.html`	297	8	305
`./Official Documentation/html/15_Trajectory_Results_Interpretation.html`	139	0	139
`./Official Documentation/html/02_Installation_Setup.html`	204	12	216
`./Official Documentation/html/16_Cross_Anchor_Comparative_Analysis.html`	53	0	53
`./Official Documentation/html/11_Stability_Analysis.html`	140	0	140
`./Official Documentation/html/index.html`	134	14	148

▶ Shell

File ↕	Code ↕	Comments ↕	Blanks ↕	Total ↕
`./bash/run_commands_all_anchors.sh`	6	3	3	12

▶ Python

19810

2167

3599

25576

File ↕	Code ↕	Comments ↕	Blanks ↕	Total ↕
`./Official Documentation/scripts/html_template.py`	69	0	3	72
`./Official Documentation/scripts/generate_html.py`	42	9	13	64
`./process-nbcm-tsv.py`	3191	524	632	4347
`./preprocess_and_aggregate.py`	178	14	30	222
`./helpers/scripts/04_proportions_over_time_stats.py`	439	87	78	604
`./helpers/scripts/03_composition.py`	230	54	54	338
`./helpers/scripts/09_plot_normalized_projection_strength_data.py`	295	46	67	408
`./helpers/scripts/15_volcano_trajectories.py`	2941	308	464	3713
`./helpers/scripts/11_compare_vsv_mapseq_two_way.py`	294	41	85	420
`./helpers/scripts/05_motif_analysis.py`	314	59	60	433
`./helpers/scripts/08_motif_clustering.py`	672	79	168	919
`./helpers/scripts/00_teleporting_barcode_detection.py`	672	2	79	753
`./helpers/scripts/10_plot_per_cell_projection_strength_across_ages.py`	164	13	32	209
`./helpers/scripts/14_model_group_comparison.py`	601	95	134	830
`./helpers/scripts/10_compare_datasets_pipeline.py`	328	33	73	434
`./helpers/scripts/06_all_motif_divergence.py`	138	18	33	189
`./helpers/scripts/transform_replicates_to_wide.py`	167	4	22	193
`./helpers/scripts/16_power_analysis.py`	1827	47	133	2007
`./helpers/scripts/07_motif_significange_trajectories.py`	359	31	51	441
`./helpers/scripts/13_aggregate_projection_summaries.py`	176	22	46	244
`./helpers/scripts/01_motif_analysis_per_animal.py`	1263	181	222	1666
`./helpers/scripts/02_projection_analysis.py`	668	123	160	951
`./helpers/scripts/17_jsd_cross_source_summary.py`	506	0	52	558
`./helpers/scripts/12_compare_datasets_pipeline_mapseq.py`	490	46	107	643
`./helpers/scripts/18_mean_jsd_transition_tests.py`	300	9	48	357
`./postprocessing_checks.py`	828	112	130	1070
`./MAPseq_wizard/__init__.py`	6	0	3	9
`./MAPseq_wizard/main.py`	16	3	10	29
`./MAPseq_wizard/utils/__init__.py`	3	0	2	5
`./MAPseq_wizard/utils/path_utils.py`	58	6	18	82
`./MAPseq_wizard/utils/header_extractor.py`	64	3	16	83
`./MAPseq_wizard/utils/validation.py`	76	3	36	115
`./MAPseq_wizard/ui/step_execute.py`	116	8	34	158
`./MAPseq_wizard/ui/__init__.py`	3	0	2	5
`./MAPseq_wizard/ui/step_preprocessing.py`	408	44	101	553
`./MAPseq_wizard/ui/step_review.py`	121	6	28	155
`./MAPseq_wizard/ui/step_helper_scripts.py`	51	0	14	65
`./MAPseq_wizard/ui/step_project_setup.py`	67	4	16	87
`./MAPseq_wizard/ui/step_main_processing.py`	216	12	57	285
`./MAPseq_wizard/ui/step_qc_figures.py`	66	2	20	88
`./MAPseq_wizard/ui/wizard_window.py`	137	17	32	186
`./MAPseq_wizard/pipeline_executor.py`	198	17	38	253
`./MAPseq_wizard/config_manager.py`	215	13	40	268
`./MAPseq_wizard/command_generator.py`	352	38	76	466
`./setup_wizard.py`	361	20	56	437
`./MAPseq_Wizard.py`	124	14	24	162

▶ Markdown

2892

1457

4349

File ↕	Comments ↕	Blanks ↕	Total ↕
`./Official Documentation/chapters/02_Installation_Setup.md`	121	65	186
`./Official Documentation/chapters/15_Trajectory_Results_Interpretation.md`	60	39	99
`./Official Documentation/chapters/11_Stability_Analysis.md`	63	42	105
`./Official Documentation/chapters/08_Output_Files_Interpretation.md`	137	93	230
`./Official Documentation/chapters/06_Probability_Models.md`	173	107	280
`./Official Documentation/chapters/12_Troubleshooting_Best_Practices.md`	241	98	339
`./Official Documentation/chapters/03_Data_Preparation.md`	135	64	199
`./Official Documentation/chapters/16_Cross_Anchor_Comparative_Analysis.md`	28	13	41
`./Official Documentation/chapters/10_Mathematical_Functions.md`	204	135	339
`./Official Documentation/chapters/14_Experimental_Features.md`	58	41	99
`./Official Documentation/chapters/01_Introduction.md`	151	60	211
`./Official Documentation/chapters/09_Code_Review.md`	192	78	270
`./Official Documentation/chapters/05_Statistical_Methods.md`	253	164	417
`./Official Documentation/chapters/07_Helper_Scripts.md`	172	105	277
`./Official Documentation/chapters/13_References_Appendices.md`	215	60	275
`./Official Documentation/chapters/04_Main_Processing_Pipeline.md`	219	93	312
`./Official Documentation/README.md`	76	35	111
`./MAPseq_wizard/README.md`	31	13	44
`./README.md`	363	152	515

▶ Plain Text

File ↕	Code ↕	Comments ↕	Blanks ↕	Total ↕
`./sample_data/labels_for_p60_aggregated_cleaned_matrix.txt`	0	1	0	1
`./requirements.txt`	0	17	0	17

▶ RPM Specfile

File ↕	Code ↕	Comments ↕	Blanks ↕	Total ↕
`./setup_wizard.spec`	34	1	3	38
`./MAPseq_Wizard.spec`	34	1	3	38

Total 87 24348 5082 5151 34581

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